HistoCancer

Histopathologic Cancer Detection Identify metastatic tissue in histopathologic scans of lymph node sections

https://www.kaggle.com/c/histopathologic-cancer-detection

%reload_ext autoreload
%autoreload 2
%matplotlib inline

from fastai.vision import *
from fastai.metrics import accuracy

PATH = "/home/katey/DeepLearning/Data/HistoCancer/"

sz = 96
bs = 128

tfms = get_transforms(flip_vert = True)

data = ImageDataBunch.from_csv(path = PATH, folder = 'train', valid_pct = 0.2, 
                               csv_labels = f'{PATH}train_labels.csv',
                               suffix='.tif',ds_tfms=tfms, size=sz).normalize(imagenet_stats)

data.show_batch(rows=5, figsize=(12,10))